Random Trees

Random trees have been introduced by Leo Breiman and Adele Cutler: http://www.stat.berkeley.edu/users/breiman/RandomForests/ . The algorithm can deal with both classification and regression problems. Random trees is a collection (ensemble) of tree predictors that is called forest further in this section (the term has been also introduced by L. Breiman). The classification works as follows: the random trees classifier takes the input feature vector, classifies it with every tree in the forest, and outputs the class label that recieved the majority of “votes”. In case of a regression, the classifier response is the average of the responses over all the trees in the forest.

All the trees are trained with the same parameters but on different training sets. These sets are generated from the original training set using the bootstrap procedure: for each training set, you randomly select the same number of vectors as in the original set ( =N ). The vectors are chosen with replacement. That is, some vectors will occur more than once and some will be absent. At each node of each trained tree, not all the variables are used to find the best split, but a random subset of them. With each node a new subset is generated. However, its size is fixed for all the nodes and all the trees. It is a training parameter set to by default. None of the built trees are pruned.

In random trees there is no need for any accuracy estimation procedures, such as cross-validation or bootstrap, or a separate test set to get an estimate of the training error. The error is estimated internally during the training. When the training set for the current tree is drawn by sampling with replacement, some vectors are left out (so-called oob (out-of-bag) data ). The size of oob data is about N/3 . The classification error is estimated by using this oob-data as follows:

1. Get a prediction for each vector, which is oob relative to the i-th tree, using the very i-th tree.
2. After all the trees have been trained, for each vector that has ever been oob, find the class-winner for it (the class that has got the majority of votes in the trees where the vector was oob) and compare it to the ground-truth response.
3. Compute the classification error estimate as a ratio of the number of misclassified oob vectors to all the vectors in the original data. In case of regression, the oob-error is computed as the squared error for oob vectors difference divided by the total number of vectors.

For the random trees usage example, please, see letter_recog.cpp sample in OpenCV distribution.

References:

• Machine Learning, Wald I, July 2002. http://stat-www.berkeley.edu/users/breiman/wald2002-1.pdf
• Looking Inside the Black Box, Wald II, July 2002. http://stat-www.berkeley.edu/users/breiman/wald2002-2.pdf
• Software for the Masses, Wald III, July 2002. http://stat-www.berkeley.edu/users/breiman/wald2002-3.pdf
• And other articles from the web site http://www.stat.berkeley.edu/users/breiman/RandomForests/cc_home.htm

CvRTParams

class CvRTParams

Training parameters of random trees.

The set of training parameters for the forest is a superset of the training parameters for a single tree. However, random trees do not need all the functionality/features of decision trees. Most noticeably, the trees are not pruned, so the cross-validation parameters are not used.

CvRTParams::CvRTParams:

The constructors.

C++: CvRTParams::CvRTParams()

C++: CvRTParams::CvRTParams(int max_depth, int min_sample_count, float regression_accuracy, bool use_surrogates, int max_categories, const float* priors, bool calc_var_importance, int nactive_vars, int max_num_of_trees_in_the_forest, float forest_accuracy, int termcrit_type)

Parameters:

• max_depth – the depth of the tree. A low value will likely underfit and conversely a high value will likely overfit. The optimal value can be obtained using cross validation or other suitable methods.
• min_sample_count – minimum samples required at a leaf node for it to be split. A reasonable value is a small percentage of the total data e.g. 1%.
• max_categories – Cluster possible values of a categorical variable into K max_categories clusters to find a suboptimal split. If a discrete variable, on which the training procedure tries to make a split, takes more than max_categories values, the precise best subset estimation may take a very long time because the algorithm is exponential. Instead, many decision trees engines (including ML) try to find sub-optimal split in this case by clustering all the samples into max_categories clusters that is some categories are merged together. The clustering is applied only in n>2-class classification problems for categorical variables with N > max_categories possible values. In case of regression and 2-class classification the optimal split can be found efficiently without employing clustering, thus the parameter is not used in these cases.
• calc_var_importance – If true then variable importance will be calculated and then it can be retrieved by CvRTrees::get_var_importance().
• nactive_vars – The size of the randomly selected subset of features at each tree node and that are used to find the best split(s). If you set it to 0 then the size will be set to the square root of the total number of features.
• max_num_of_trees_in_the_forest – The maximum number of trees in the forest (suprise, suprise). Typically the more trees you have the better the accuracy. However, the improvement in accuracy generally diminishes and asymptotes pass a certain number of trees. Also to keep in mind, the number of tree increases the prediction time linearly.
• forest_accuracy – Sufficient accuracy (OOB error).
• termcrit_type –

  The type of the termination criteria:

  • CV_TERMCRIT_ITER Terminate learning by the max_num_of_trees_in_the_forest;
  • CV_TERMCRIT_EPS Terminate learning by the forest_accuracy;
  • CV_TERMCRIT_ITER | CV_TERMCRIT_EPS Use both termination criterias.

For meaning of other parameters see CvDTreeParams::CvDTreeParams().

The default constructor sets all parameters to default values which are different from default values of CvDTreeParams:

CvRTParams::CvRTParams() : CvDTreeParams( 5, 10, 0, false, 10, 0, false, false, 0 ),
    calc_var_importance(false), nactive_vars(0)
{
    term_crit = cvTermCriteria( CV_TERMCRIT_ITER+CV_TERMCRIT_EPS, 50, 0.1 );
}

CvRTrees

class CvRTrees

The class implements the random forest predictor as described in the beginning of this section.

CvRTrees::train

Trains the Random Trees model.

C++: bool CvRTrees::train(const Mat& trainData, int tflag, const Mat& responses, const Mat& varIdx=Mat(), const Mat& sampleIdx=Mat(), const Mat& varType=Mat(), const Mat& missingDataMask=Mat(), CvRTParams params=CvRTParams() )

C++: bool CvRTrees::train(const CvMat* trainData, int tflag, const CvMat* responses, const CvMat* varIdx=0, const CvMat* sampleIdx=0, const CvMat* varType=0, const CvMat* missingDataMask=0, CvRTParams params=CvRTParams() )

C++: bool CvRTrees::train(CvMLData* data, CvRTParams params=CvRTParams() )

Python: cv2.RTrees.train(trainData, tflag, responses[, varIdx[, sampleIdx[, varType[, missingDataMask[, params]]]]]) → retval

The method CvRTrees::train() is very similar to the method CvDTree::train() and follows the generic method CvStatModel::train() conventions. All the parameters specific to the algorithm training are passed as a CvRTParams instance. The estimate of the training error (oob-error) is stored in the protected class member oob_error.

CvRTrees::predict

Predicts the output for an input sample.

C++: double CvRTrees::predict(const Mat& sample, const Mat& missing=Mat() ) const

C++: float CvRTrees::predict(const CvMat* sample, const CvMat* missing=0 ) const

Python: cv2.RTrees.predict(sample[, missing]) → retval

Parameters:

• sample – Sample for classification.
• missing – Optional missing measurement mask of the sample.

The input parameters of the prediction method are the same as in CvDTree::predict() but the return value type is different. This method returns the cumulative result from all the trees in the forest (the class that receives the majority of voices, or the mean of the regression function estimates).

CvRTrees::predict_prob

Returns a fuzzy-predicted class label.

C++: float CvRTrees::predict_prob(const cv::Mat& sample, const cv::Mat& missing=cv::Mat() ) const

C++: float CvRTrees::predict_prob(const CvMat* sample, const CvMat* missing=0 ) const

Python: cv2.RTrees.predict_prob(sample[, missing]) → retval

Parameters:

• sample – Sample for classification.
• missing – Optional missing measurement mask of the sample.

The function works for binary classification problems only. It returns the number between 0 and 1. This number represents probability or confidence of the sample belonging to the second class. It is calculated as the proportion of decision trees that classified the sample to the second class.

CvRTrees::getVarImportance

Returns the variable importance array.

C++: Mat CvRTrees::getVarImportance()

C++: const CvMat* CvRTrees::get_var_importance()

Python: cv2.RTrees.getVarImportance() → importanceVector

The method returns the variable importance vector, computed at the training stage when CvRTParams::calc_var_importance is set to true. If this flag was set to false, the NULL pointer is returned. This differs from the decision trees where variable importance can be computed anytime after the training.

CvRTrees::get_proximity

Retrieves the proximity measure between two training samples.

C++: float CvRTrees::get_proximity(const CvMat* sample1, const CvMat* sample2, const CvMat* missing1=0, const CvMat* missing2=0 ) const

Parameters:

• sample1 – The first sample.
• sample2 – The second sample.
• missing1 – Optional missing measurement mask of the first sample.
• missing2 – Optional missing measurement mask of the second sample.

The method returns proximity measure between any two samples. This is a ratio of those trees in the ensemble, in which the samples fall into the same leaf node, to the total number of the trees.

CvRTrees::calc_error

Returns error of the random forest.

C++: float CvRTrees::calc_error(CvMLData* data, int type, std::vector<float>* resp=0 )

The method is identical to CvDTree::calc_error() but uses the random forest as predictor.

CvRTrees::get_train_error

Returns the train error.

C++: float CvRTrees::get_train_error()

The method works for classification problems only. It returns the proportion of incorrectly classified train samples.

CvRTrees::get_rng

Returns the state of the used random number generator.

C++: CvRNG* CvRTrees::get_rng()

CvRTrees::get_tree_count

Returns the number of trees in the constructed random forest.

C++: int CvRTrees::get_tree_count() const

CvRTrees::get_tree

Returns the specific decision tree in the constructed random forest.

C++: CvForestTree* CvRTrees::get_tree(int i) const

Parameters:

• i – Index of the decision tree.